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Table 2 Classic, fully penetrant 2-locus model of pure epistasis

From: A classification and characterization of two-locus, pure, strict, epistatic models for simulation and detection

  

SNP 2

Marginal

 

Genotype

BB (.25)

Bb (.5)

bb (.25)

Penetrance

 

AA (.25)

0

1

0

.5

SNP 1

Aa (.5)

1

0

1

.5

 

aa (.25)

0

1

0

.5

 

Marginal

.5

.5

.5

K =.5

 

Penetrance