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Table 3 High quality, non-repetitive DNA measurements from The 1000 Genomes Project which match one or more published Mycoplasma genomes but which do not match the reference human genome

From: Mycoplasma contamination in the 1000 Genomes Project

2.0

2.9

ERR009050.2605525

GCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTC E=7 10−13

S16 23S ribosomal RNA

2.0

2.3

ERR002459.4464466

ACGGTTTTCAAGACCGTTCCCTTCAGCCAGACTTGG E=5 10−10

Transfer RNA-Ser

   

CCTGACGGTTTTCAAGACCGTTCCCTTCAGCCAGAC E=5 10−10

 

1.8

2.1

ERR013159.14600701

CGCTTTCATTGTTCCGCCAGTAGCTAAAACATCATCAATAATTGCTACTTTTTGGCCTTTTTTCAACATATTAGTTT

 
   

GGATTTCTAGAGTTGATTTACCATATTCTAA E=3 10−52

 
   

TTTTTGGCCTTTTTTCAACATATTAGTTTGGATTTCTAGAGTTGATTTACCATATTCTAAATCATACTCAAAACTAAT

 
   

AACGTCTCCTGGTAATTTTTTAGGTTTTCT E=3 10−52

 

1.8

2.0

ERR013159.12593030

GAGCTTGTTTTTCGTATTTTTCAATTTCTATTTCGTCATTGATTTGTCAATTTGGTAAATTTGTGTTTTCGCTATCAGG

 
   

TTTGGTTAGTTTAAAATAACCATCAAAAG E=2 10−10

 
   

AGGTTTGGTTAGTTTAAAATAACCATCAAAAGTAATTATTGAACCAGAAAGATAAAATTTGTGTTCTTGATTTAAA

 
   

AATTCATAACGTGTAATTTGTCTTTCAGGAAC E=3 10−52

 

1.7

2.2

ERR013159.18901091

GGTCAAGTTTACAACAAAATGTTTGCACTTCAAAAAGAACTAGAAGAACTAGAAGAAAATAAAGAAGAAAATA

 
   

CTTTAATCAAAGAAGTAGTGAACCAAGAAGATATT E=3 10−6

 
   

AAAAGAACTAGAAGAACTAGAAGAAAATAAAGAAGAAAATACTTTAATCAAAGAAGTAGTGAACCAAGAAGA

 
   

TATTGCAAATATTGTTTCTAAATGAACAAAAATTCC E=3 10−9

 

2.0

1.9

ERR013159.7037432

TCTAGAGATACTGCCTGGGTAACCAGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCTCTTACGAGTGGG

 
   

GCAACACACGTGCTACAATGGTCGGTACAAAGAGA E=3 10−52

16S ribosomal RNA

   

AGTGGGGCAACACACGTGCTACAATGGTCGGTACAAAGAGAAGCAATATGGTGACATGGAGCAAATCTCAAA

 
   

AAACCGATCTCAGTTCGGATTGAAGTCTGCAACTCG E=3 10−52

 

1.9

1.9

ERR022473.14544768

TGCTTTTTTACCTCATGGAGTAAGTGGTGCTTTACGTCCAATTGGTTGTTTACCTTCACCACCACCATGTGGGTGA

 
   

TCATTTGGGTTCATTACAGAACCTCTAACTGT E=3 10−52

Ribosomal protein cluster

   

GGTGATCATTTGGGTTCATTACAGAACCTCTAACTGTTGGACGAATACCTAAATGACGATTACGTCCTGCTTTTCC

 
   

AATGTTAACTAGGTTATGTTCTTCATTTCCTA E=3 10−52

 
  1. Entropy per bit (column 1), 3rd worst quality (column 2), file and sequence id (column 3) of Solexa DNA strands (column 4). E = chance of random match [10]. Column 5 gives an example gene (see discussion on page 12).