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Table 7 11-factor and DPPS encoding for HLA-DRB1*0101

From: Accurate prediction of major histocompatibility complex class II epitopes by sparse representation via 1-minimization

  11-factor encoding
  I C 50 cutoff 100 300 500 1000 5000 10000 15000
  Sn Avg (%) 94.70 81.31 73.10 60.49 40.13 13.98 4.70
SR ( 1) Sp Avg (%) 10.70 38.79 51.11 68.25 83.50 96.72 99.23
  Acc Avg (%) 59.31 57.55 59.42 66.00 76.65 87.98 91.74
  Sn Avg (%) 80.46 79.84 76.55 73.05 55.24 37.70 20.51
SVM Sp Avg (%) 45.39 45.22 51.70 59.53 80.45 88.48 93.20
  Acc Avg (%) 65.67 65.24 62.66 64.64 76.46 83.11 87.43
  DPPS encoding
  Sn Avg (%) 72.89 52.12 39.46 24.60 8.41 4.61 4.24
SR ( 1) Sp Avg (%) 48.24 72.52 82.56 91.84 98.13 99.33 99.59
  Acc Avg (%) 62.51 63.52 66.27 72.36 83.96 89.32 92.03
  Sn Avg (%) 70.72 68.74 56.70 72.50 59.55 56.79 55.44
SVM Sp Avg (%) 54.62 57.37 75.38 49.70 75.77 76.90 79.59
  Acc Avg (%) 63.94 62.38 68.32 56.32 73.20 74.78 77.67