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Table 6 11-factor and DPPS encoding for HLA-DPA1*0103/DPB1*0201

From: Accurate prediction of major histocompatibility complex class II epitopes by sparse representation via 1-minimization

  11-factor encoding
  I C 50 cutoff 100 300 500 1000 5000 10000 15000
  Sn Avg (%) 96.15 95.83 94.14 90.24 76.29 68.91 71.09
SR ( 1) Sp Avg (%) 0.00 0.00 18.25 29.22 70.38 75.52 75.39
  Acc Avg (%) 86.21 79.31 77.28 71.29 73.31 72.64 73.61
  Sn Avg (%) 96.19 96.32 95.20 93.44 89.10 83.78 72.69
SVM Sp Avg (%) 16.67 21.00 22.14 24.57 58.29 72.09 81.24
  Acc Avg (%) 88.02 82.83 78.72 72.21 73.59 77.06 77.69
  DPPS encoding
  Sn Avg (%) 93.93 92.22 87.37 83.29 70.67 66.28 67.76
SR ( 1) Sp Avg (%) 18.33 11.00 26.67 51.00 75.86 80.78 85.85
  Acc Avg (%) 85.82 77.69 73.64 73.30 73.31 74.67 78.44
  Sn Avg (%) 58.33 46.55 43.66 44.52 49.10 55.00 57.82
SVM Sp Avg (%) 77.50 94.67 94.29 93.33 88.67 87.09 87.42
  Acc Avg (%) 60.42 55.14 55.08 59.72 68.99 73.62 75.33