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Table 5 11-factor and DPPS encoding for H2-IA d

From: Accurate prediction of major histocompatibility complex class II epitopes by sparse representation via 1-minimization

  11-factor encoding
  I C 50 cutoff 100 300 500 1000 5000 10000 15000
  Sn Avg (%) 100.00 100.00 94.74 96.58 93.90 96.19 97.65
SR ( 1) Sp Avg (%) 0.00 0.00 8.33 5.56 36.00 4.76 7.50
  Acc Avg (%) 90.00 80.00 75.80 77.00 70.48 70.22 68.80
  Sn Avg (%) 96.93 98.37 98.57 97.74 98.33 100.00 99.35
SVM Sp Avg (%) 23.61 24.17 25.24 18.10 26.25 25.40 23.61
  Acc Avg (%) 86.19 85.80 83.17 79.80 69.33 78.94 75.00
  DPPS encoding
  Sn Avg (%) 94.62 95.06 95.95 92.71 78.29 89.84 85.18
SR ( 1) Sp Avg (%) 10.71 30.00 36.67 37.00 63.00 61.43 59.64
  Acc Avg (%) 82.68 83.46 83.51 80.27 72.23 81.82 77.02
  Sn Avg (%) 70.82 79.50 81.63 76.03 83.05 76.83 82.32
SVM Sp Avg (%) 45.00 33.00 39.67 50.33 39.00 65.71 51.79
  Acc Avg (%) 67.33 71.39 72.98 70.08 65.30 73.73 72.63