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Table 5 11-factor and DPPS encoding for H2-IA d

From: Accurate prediction of major histocompatibility complex class II epitopes by sparse representation via 1-minimization

 

11-factor encoding

 

I C 50 cutoff

100

300

500

1000

5000

10000

15000

 

Sn Avg (%)

100.00

100.00

94.74

96.58

93.90

96.19

97.65

SR ( 1)

Sp Avg (%)

0.00

0.00

8.33

5.56

36.00

4.76

7.50

 

Acc Avg (%)

90.00

80.00

75.80

77.00

70.48

70.22

68.80

 

Sn Avg (%)

96.93

98.37

98.57

97.74

98.33

100.00

99.35

SVM

Sp Avg (%)

23.61

24.17

25.24

18.10

26.25

25.40

23.61

 

Acc Avg (%)

86.19

85.80

83.17

79.80

69.33

78.94

75.00

 

DPPS encoding

 

Sn Avg (%)

94.62

95.06

95.95

92.71

78.29

89.84

85.18

SR ( 1)

Sp Avg (%)

10.71

30.00

36.67

37.00

63.00

61.43

59.64

 

Acc Avg (%)

82.68

83.46

83.51

80.27

72.23

81.82

77.02

 

Sn Avg (%)

70.82

79.50

81.63

76.03

83.05

76.83

82.32

SVM

Sp Avg (%)

45.00

33.00

39.67

50.33

39.00

65.71

51.79

 

Acc Avg (%)

67.33

71.39

72.98

70.08

65.30

73.73

72.63