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Table 1 Number of genes called differentially expressed between liver and kidney at a false discovery rate <0.0001 using different normalization methods

From: An iteration normalization and test method for differential expression analysis of RNA-seq data

  Library size TMM IMM Overlap
  normalization normalization normalization  
Higher in liver 2082 3759 3746 2082
Higher in kidney 7496 4310 4337 4292
Total 9578 8069 8083 6374
House keeping     
genes (538)     
Higher in liver 40 121 118 40
Higher in kidney 357 209 211 207
Total 397 330 329 247