Table 1 Number of genes called differentially expressed between liver and kidney at a false discovery rate <0.0001 using different normalization methods
From: An iteration normalization and test method for differential expression analysis of RNA-seq data
| Â | Library size | TMM | IMM | Overlap |
|---|---|---|---|---|
| Â | normalization | normalization | normalization | Â |
Higher in liver | 2082 | 3759 | 3746 | 2082 |
Higher in kidney | 7496 | 4310 | 4337 | 4292 |
Total | 9578 | 8069 | 8083 | 6374 |
House keeping | Â | Â | Â | Â |
genes (538) | Â | Â | Â | Â |
Higher in liver | 40 | 121 | 118 | 40 |
Higher in kidney | 357 | 209 | 211 | 207 |
Total | 397 | 330 | 329 | 247 |