Prediction of Drosophila melanogaster gene function using Support Vector Machines

Mitsakakis, Nicholas; Razak, Zak; Escobar, Michael; Westwood, J Timothy

doi:10.1186/1756-0381-6-8

BioData Mining

Table 3 Gene Lists and Fluorescent In Situ Hybridization (FISH) analysis for oxidative phosphorylation GO category

From: Prediction of Drosophila melanogaster gene function using Support Vector Machines

GeneID	Sample	FISH	Gene	Prob.	GeneID	Sample	FISH	Gene	Prob.
		match	prec.	score			match	prec.	score
CG12934	LP05346		1	0.814	CG5608	LD32461		0.898	0.537
CG1715	LD33960	+	1	0.81	CG8401	GH01937		0.897	0.548
CG33316	SD08735		0.975	0.656	CG6094	GH26345		0.897	0.553
CG5523	GH14535		0.975	0.754	CG9813	GH04365		0.892	0.522
CG10675	GH14673		0.975	0.79	CG13220	GH06079	+	0.885	0.538
CG9921	GH07174		0.975	0.714	CG9056	GH11503		0.885	0.559
CG8486	GH04578		0.975	0.594	CG4577	GH23863		0.875	0.535
CG8086	GH25625		0.975	0.752	CG5325	GM14611		0.871	0.539
CG10075	GH25609	+	0.975	0.679	CG7710	LP03578		0.871	0.544
CG30116	GH04922		0.975	0.677	CG14125	GH07601		0.868	0.502
CG5532	GH01442	+	0.975	0.662	CG1859	GH26443		0.868	0.52
CG12239	GH14380		0.975	0.66	CG5325	GH03076		0.829	0.505
CG8740	GH05582	+	0.975	0.658	CG1135	GH01794		0.829	0.489
CG18616	GH04932	+	0.975	0.737	CG4757	SD01814		0.826	0.496
CG3420	GH11502	+	0.975	0.682	CG5989	GH26459	+	0.826	0.481
CG15669	GH02495		0.975	0.629	CG3153	GH04701		0.812	0.468
CG11203	GH26638		0.975	0.691	CG1927	GH11112		0.812	0.462
CG6044	GH12587		0.975	0.61	CG7217	LD45324		0.812	0.457
CG5903	GH13386	-	0.975	0.768	CG6123	GH13094		0.812	0.47
CG14823	GH02020		0.975	0.656	CG2269	GH06015	-	0.809	0.48
CG13367	GH14959		0.975	0.7	CG4589	LP05955		0.807	0.489
CG6424	GH08256		0.975	0.743	CG14438	GH25521		0.8	0.47
CG7083	GH27162		0.947	0.68	CG8206	GH04557		0.794	0.437
CG3631	LD29155	+	0.925	0.655	CG9336	GH22472		0.794	0.453
CG4281	GH10944	+	0.925	0.604	CG7570	GH27163		0.794	0.459
CG12706	GH14695		0.925	0.648	CG10973	LD28549		0.792	0.452
CG10249	GH11802		0.925	0.56	CG7506	GH02466		0.788	0.467
CG14292	GH14813		0.912	0.592	CG6455	GH04666		0.786	0.463
CG4972	GH14975		0.912	0.592	CG17828	GH04984	+	0.778	0.432
CG32795	HL08104	-	0.912	0.532	CG15765	GH28601		0.778	0.447
CG4975	GH18454		0.912	0.638	CG10585	GH23839	+	0.775	0.432
CG6550	GH28477	+	0.912	0.609	CG10039	GH11404		0.775	0.436
CG3971	GH11554	+	0.912	0.549	CG14817	GH01621		0.771	0.433
CG6659	LD45943	+	0.912	0.578	CG17666	GH08313		0.762	0.42
CG15386	GH19557		0.906	0.516	CG11737	GH22337	+	0.761	0.439
CG1231	GH01151		0.906	0.582	CG7358	GH14795		0.759	0.436
CG15067	GH14961		0.906	0.545	CG5773	GH07612		0.758	0.432
CG6008	GH05862		0.898	0.557

This table contains the genes that were predicted to belong to oxidative phospholylation GO‐BP category along with information regarding the presence in the FISH database. Notation is similar to Table 2.

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ISSN: 1756-0381

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