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Table 2 Gene Lists and Fluorescent In Situ Hybridization (FISH) analysis for DNA‐dependent DNA replication GO‐BP category

From: Prediction of Drosophila melanogaster gene function using Support Vector Machines

GeneID Sample FISH Gene Prob. GeneID Sample FISH Gene Prob.
   match prec. score    match prec. score
CG5924 LD38710   0.923 0.705 CG1109 LD26389   0.798 0.592
CG1109 LD27350   0.923 0.736 CG8290 LD37351 + 0.798 0.575
CG7663 LD46979 + 0.923 0.724 CG2910 GH11110   0.798 0.598
CG7384 LD46023   0.923 0.76 CG10364 LD32040 - 0.798 0.58
CG14464 LD29015   0.923 0.707 CG5877 LD29352   0.79 0.572
CG16892 LD26813 + 0.923 0.728 CG10625 LD39545 - 0.79 0.568
CG1578 LD28359 + 0.923 0.755 CG17509 GH12788   0.787 0.568
CG16892 LD42637   0.923 0.739 CG11409 LD40802   0.787 0.607
CG11122 LD29040   0.86 0.644 CG30007 LD29335   0.787 0.58
CG9300 LD21924   0.86 0.666 CG17681 LD30009   0.787 0.573
CG3287 SD03445   0.86 0.643 CG18622 LD26416   0.787 0.539
CG1960 GH21591   0.86 0.66 CG31152 LD29477 + 0.787 0.545
CG1024 LD28076   0.86 0.652 CG11990 LD47989 + 0.787 0.549
CG13096 SD03546   0.86 0.664 CG6724 LD40657   0.783 0.589
CG11596 LD45925   0.86 0.682 CG32069 LD47413   0.783 0.565
CG4857 LD29423 + 0.86 0.638 CG2962 LD27487   0.783 0.578
CG4949 LD46305 + 0.86 0.669 CG6049 LD27763   0.776 0.558
CG11943 SD04935   0.86 0.703 CG2260 LD30339   0.772 0.563
CG2469 LD30285 + 0.86 0.677 CG3735 LD35854   0.771 0.553
CG11596 LD42227 + 0.839 0.66 CG7110 LD39933 - 0.771 0.577
CG12785 LD27528   0.839 0.616 CG12202 LD30511 + 0.771 0.584
CG11329 LD26217   0.839 0.619 CG9591 LD26057 + 0.771 0.554
CG6066 LD27582   0.839 0.621 CG12340 LD26050   0.771 0.552
CG17050 LD35611   0.839 0.647 CG30020 LD40262   0.771 0.549
CG18004 LD27741   0.839 0.662 CG12050 LD30416 + 0.771 0.561
CG1647 LD30287   0.839 0.591 CG6151 LD28933   0.766 0.567
CG31697 SD02518   0.839 0.618 CG14657 LD28447   0.766 0.556
CG15736 LD33780 + 0.83 0.619 CG4203 LD29184   0.761 0.537
CG2691 LD46946   0.829 0.61 CG4281 SD03946   0.76 0.548
CG7728 LD39680 + 0.812 0.592 CG14005 LD30293   0.76 0.566
CG31163 SD09611 + 0.812 0.598 CG9028 LD27194 + 0.76 0.555
CG3680 LD27862   0.81 0.63 CG7824 LD26655   0.76 0.542
CG3362 LD28544   0.81 0.595 CG7407 LD29166 - 0.758 0.548
NA LD42550   0.81 0.612 CG3338 LD27356 + 0.756 0.524
CG11906 LD27134   0.798 0.566      
  1. CG number not known
  2. DNA‐dependent DNA replication GO‐BP category (along with oxidative phosphorylation) was selected for further biological validation using fluorescent in situ hybridization (FISH) analysis of early D. melanogaster embryos. In this table, genes that are predicted to belong to this category are shown along with information regarding their presence in the FISH database. Each of the genes (i.e. CG numbers) in the list was searched in a D. melanogaster FISH database to visually examine the spatial and temporal mRNA expression for that gene during early embryogenesis. Genes that are marked with (+) or (-) sign had images present in the database. Those that had patterns that largely matched that of known genes in the category are marked with a (+). If either their temporal or their spatial pattern did not match the known gene pattern, they are marked with (-). For each gene the “gene‐precision” score and the average probability estimate output from SVM are reported.