Table 2 PhenoGram input file formatting parameters
From: Visualizing genomic information across chromosomes with PhenoGram
Recognized column header | Required | Description |
|---|---|---|
CHR | Yes | Chromosome number |
POS | Yes | Base-pair location of the SNP or starting location of a base-pair to base-pair region |
PHENOTYPE | No | Name of the phenotype; required only when plotting phenotypes as colored shapes |
END | No | Ending location of a base-pair to base-pair region |
NOTE (or ANNOTATION) | No | Values in this column are shown on the plot position to the right of the chromosome; limited to 10 characters |
ETHNICITY (or ANCESTRY) | No | Specifies ethnicity or ancestry for the associated position; accepts up to three unique values in this column |
GROUP | No | Specifies a group identifier such that all phenotypes of the same identifier share a common color |
POSCOLOR | No | Shades transverse lines on the line plot with a color; specified by an integer 0-7 |