Figure 6
From: Visualizing genomic information across chromosomes with PhenoGram
Plotting lines at base-pair locations using PhenoGram. Each line represents a base-pair location genotyped on the immunochip genotyping array, an array with variants chosen for previous association with the autoimmune response and the immune system. By setting the lines to be transparent, areas of higher and lower genotyping density are made more visible. The very densely genotyped major histocompatibility region (MHC) on Chromosome 6 has been overplotted with color, as well as annotated, using PhenoGram.