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Table 2 Variant annotators

From: Unraveling genomic variation from next generation sequencing data

Tool Annotation Data support
Annotate-it [76] SNPs, miRNA, Gene, Custom OMIM, dbSNP, 200 Danish genomes, NHLBI Exomes, 1000 Genomes
KGGSeq [77] Indels, SNPs, Gene dbSNP, 1000 Genomes
ANNOVAR [78] Indels, SNPs, miRNAs, Gene, Custom dbSNP, NHLBI Exomes, 1000 Genomes
Anntools [79] Indels, SNPs, miRNAs, Gene, Custom dbSNP, 1000 Genomes
SeqAnt [80] Indels, SNPs, Gene dbSNP, 1000 Genomes
SVA [81] Indels, SNPs, Gene, Custom OMIM, dbSNP, 1000 Genomes
TREAT [82] Indels, SNPs, Gene OMIM, dbSNP, 1000 Genomes
VAAST [83] Indels, SNPs -
VarioWatch [84] SNPs, Gene OMIM, dbSNP, 1000 Genomes
Var-MD [85] SNPs -
VarSifter [86] Indels, SNPs -
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