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Table 2 Variant annotators

From: Unraveling genomic variation from next generation sequencing data

Tool

Annotation

Data support

Annotate-it [76]

SNPs, miRNA, Gene, Custom

OMIM, dbSNP, 200 Danish genomes, NHLBI Exomes, 1000 Genomes

KGGSeq [77]

Indels, SNPs, Gene

dbSNP, 1000 Genomes

ANNOVAR [78]

Indels, SNPs, miRNAs, Gene, Custom

dbSNP, NHLBI Exomes, 1000 Genomes

Anntools [79]

Indels, SNPs, miRNAs, Gene, Custom

dbSNP, 1000 Genomes

SeqAnt [80]

Indels, SNPs, Gene

dbSNP, 1000 Genomes

SVA [81]

Indels, SNPs, Gene, Custom

OMIM, dbSNP, 1000 Genomes

TREAT [82]

Indels, SNPs, Gene

OMIM, dbSNP, 1000 Genomes

VAAST [83]

Indels, SNPs

-

VarioWatch [84]

SNPs, Gene

OMIM, dbSNP, 1000 Genomes

Var-MD [85]

SNPs

-

VarSifter [86]

Indels, SNPs

-