Comparison pair | Class1 | Class 2 | Class 3 | Class 4 | |
---|---|---|---|---|---|
Randomly report one alignment per read | SOAP2 vs. Bowtie1 (2,209,957)2 | 95.69% | 3.62% | 0.69% | 0.003% |
SOAP2 vs.BWA (2,215,397) | 95.45% | 3.61% | 0.69% | 0.25% | |
Bowtie vs. BWA (2,200,129) | 95.37% | 3.70% | 0.00% | 0.25% | |
SOAP2 vs. Novoalign (2,436,379) | 49.58% | 15.40% | 25.72% | 9.26% | |
Bowtie vs. Novoalign (2,424,001) | 49.81% | 15.38% | 25.53% | 9.46% | |
BWA vs. Novoalign (2,428,458) | 49.68% | 15.44% | 25.48% | 9.40% | |
Suppress reads with multiple alignments | SOAP2 vs. Bowtie (2,085,316) | 97.84% | 0.00% | 2.15% | 0.007% |
SOAP2 vs.BWA (2,094,218) | 97.57% | 0.0008% | 1.99% | 0.43% | |
Bowtie vs. BWA (2,052,464) | 99.94% | 0.00% | 0.0003% | 0.59% | |
SOAP2 vs. Novoalign (2,303,060) | 51.37% | 13.36% | 25.71% | 9.46% | |
Bowtie vs. Novoalign (2,283,644) | 50.93% | 13.35% | 25.07% | 10.65% | |
BWA vs. Novoalign (2,292,171) | 50.86% | 13.33% | 25.35% | 10.46% |