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Table 3 GO-overrepresented gene sets in SOM-spots of highly populated housekeeping metagenes

From: Mining SOM expression portraits: feature selection and integrating concepts of molecular function

Spota

# of genes

Top overrepresented gene sets

h1

333

Cytoplasm, enzyme regulator activity, vesicle mediated transport, establishment of localization

h2

74

Cytoplasm, oxidoreductase activity, actin binding, endoplasmic reticulum, cytosol

h3

418

Cytoplasm, macromolecular complex, nucleus, protein metabolic process, protein complex

h4

89

Oxidoreductase activity, cytoplasm, mitochondrion, envelope, organelle

h5

91

Cytoplasm, Golgi apparatus, cofactor catabolic process, lipid binding, microsome

h6

101

Protein complex, macromolecular complex, cytoplasm, protein catabolic process

h7

775

Biopolymer metabolic process, biosynthetic process, nucleic acid, RNA processing

h8

50

Protein metabolic process, endosome, cellular metabolic process, phosphatase activity

h9

176

Nucleus, biopolymer metabolic process, nucleic acid / RNA metabolic process

h10

253

Biopolymer metabolic process, mRNA metabolic process, RNA processing, nucleus

h11

118

Cytoplasm, proteasome complex, cellular protein metabolic process, protein metabolic process

  1. a spots are defined in Figure 12e.