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Table 1 Tools for ranking biomedical literature using document sets

From: Caipirini: using gene sets to rank literature

Tool

Input

Dictionary

Method

 

Sets

Genes

  

Kleio [14]

1

Yes

~2 million entities

VSM score

PubFinder [5]

1

No

~100,000 words from Medline

Likelihood

MScanner [6]

1

No

~25,000 MeSH terms

Bayesian

MedlineRanker [7]

1 or 2

No

Detects nouns via syntax

Bayesian

Caipirini

2

Yes

~4 million entities

SVM