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Table 1 Copy Number Calls at Invariant Regions of the Genome

From: A comparison of genomic copy number calls by Partek Genomics Suite, Genotyping Console and Birdsuite algorithms to quantitative PCR

Region

Partek

GTCa

Birdsuite

qPCR

2:240,032,088

28/0b

28/0

28/0

24/4

3:180,366,781

27/0

27/0

27/0

27/0

6:326,964

5/0

5/0

5/0

5/0

7:11,288,419

17/0

17/0

17/0

17/0

7:24,002,710

24/0

24/0

24/0

24/0

8:51,195,001

8/0

8/0

6/2

6/2

9:16,930,899

25/0

24/1

25/0

25/0

13:53,784,055

9/0

9/0

9/0

9/0

13:56,713,547

9/0

9/0

9/0

9/0

15:32,555,299

8/0

8/0

8/0

8/0

16:3,104,308

9/0

9/0

9/0

9/0

16:4,280,824

8/0

8/0

8/0

8/0

16:18,557,305

9/0

9/0

9/0

9/0

20:28,068,523

6/0

6/0

6/0

6/0

20:29,271,114

8/0

8/0

8/0

8/0

22:47,400,722

16/0

16/0

16/0

16/0

  1. aGTC = Genotyping Console 2.0
  2. bValues are represented as "CN = 2"/"CN = non 2"