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Table 2 Datasets investigated

From: Rule based classifier for the analysis of gene-gene and gene-environment interactions in genetic association studies

Dataset Model # SNPs #Patients$ Ratio Control/Case FP [%] FN [%]
1 A 500 300 2 5 5
2 A 1500 300 2 5 5
3 A 3000 300 2 5 5
4 A 500 600 2 5 5
5 A 1500 600 2 5 5
6 A 3000 600 2 5 5
7 A 500 300 2 10 10
8 A 1500 300 2 10 10
9 A 3000 300 2 10 10
10 A 500 600 2 10 10
11 A 1500 600 2 10 10
12 A 3000 600 2 10 10
13 A 500 300 2 20 20
14 A 1500 300 2 20 20
15 A 3000 300 2 20 20
16 A 500 600 2 20 20
17 A 1500 600 2 20 20
18 A 3000 600 2 20 20
19 B 500 150+150 2 5 5
20 B 1500 150+150 2 5 5
21 B 3000 150+150 2 5 5
22 B 500 300+300 2 5 5
23 B 1500 300+300 2 5 5
24 B 3000 300+300 2 5 5
25 B 500 150+150 2 10 10
26 B 1500 150+150 2 10 10
27 B 3000 150+150 2 10 10
28 B 500 300+300 2 10 10
29 B 1500 300+300 2 10 10
30 B 3000 300+300 2 10 10
31 B 500 150+150 2 20 20
32 B 1500 150+150 2 20 20
33 B 3000 150+150 2 20 20
34 B 500 300+300 2 20 20
35 B 1500 300+300 2 20 20
36 B 3000 300+300 2 20 20
37 C 500 300 2 n.a. n.a.
38 C 1500 300 2 n.a. n.a.
39 C 3000 300 2 n.a. n.a.
40 C 500 600 2 n.a. n.a.
41 C 1500 600 2 n.a. n.a.
42 C 3000 600 2 n.a. n.a.
  1. $ For case rule A patients are equally distributed for the 4 case rules; for case rule B the first number indicates the number for rule 1, the second number for rule 2; n.a: not applicable.