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Table 1 Weighted kappa statistics for algorithm agreement.

From: LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium

Chromosome 1

 

Four Gamete Rule

Gabriel et al.

LD-Spline 0.6

LD-Spline 0.8

LD-Spline 1

True Bounds

0.9512

0.9514

0.9092

0.9089

0.9383

Four Gamete Rule

 

0.9762

0.9123

0.9163

0.9498

Gabriel et al.

  

0.8931

0.9054

0.9412

LD-Spline 0.6

   

0.9681

0.9335

LD-Spline 0.8

    

0.9479

Chromosome 18

 

Four Gamete Rule

Gabriel et al.

LD-Spline 0.6

LD-Spline 0.8

LD-Spline 1

True Bounds

0.9566

0.9271

0.9377

0.9153

0.9374

Four Gamete Rule

 

0.9740

0.9400

0.9379

0.9495

Gabriel et al.

  

0.9226

0.9208

0.9292

LD-Spline 0.6

   

0.9864

0.9635

LD-Spline 0.8

    

0.9671

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