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Table 2 Broad Dataset with Flanking Positions Identified as either purine or pyrimidine

From: Multifactor dimensionality reduction analysis identifies specific nucleotide patterns promoting genetic polymorphisms

SNP

Count

nucleotide positions

Testing accuracy

P-value

X 2

G→A

322

+1

0.571

0.02

0.001

T→C

371

+2

0.536

<0.01

0.001

T→G

87

-2, +2

0.621

0.02

0.001

  1. MDR analysis of SNP flanking regions where upstream 3' to SNP site equals positions -10 through -1 and 5' region from the SNP site extending downstream equals position +1 through +10. All positions were evaluated with regard to pyrimidine or purine identity.
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ISSN: 1756-0381