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Table 3 Number of AIMs and percentage with delta ≥ 0.3 (in parentheses) for HapMap, Affymetrix, Illumina and AIM databases.

From: Database mining for selection of SNP markers useful in admixture mapping

 

HapMap SNPs

Affymerix SNPs

Illumina SNPs

AIM SNPs

Chr

Total

delta (%)

Total

delta (%)

Total

delta (%)

Total

delta (%)

1

270009

36255 (13)

39418

4439 (11)

9820

1471 (15)

235

235 (100)

2

293090

46551 (16)

40633

4649 (11)

8702

1280(15)

217

217(100)

3

225937

35394 (16)

33120

3779 (11)

7207

1021(14)

178

178(100)

4

214465

33242 (16)

31339

3449 (11)

6000

929(15)

124

124(100)

5

221858

31821 (14)

31595

3245 (10)

6329

879(14)

129

129(100)

6

244251

32121 (13)

31130

3126 (10)

6579

894(14)

184

184(100)

7

182354

26745 (15)

25407

2785 (11)

5581

826(15)

121

121(100)

8

192846

32106 (17)

26948

3142 (12)

4891

751(15)

122

122(100)

9

162192

23800 (15)

22596

2447 (11)

4480

585(13)

108

108(100)

10

189583

26671 (14)

28217

3005 (11)

5240

784(15)

135

135(100)

11

180434

23850 (13)

28217

2767 (11)

5240

863(15)

154

154(100)

12

169898

23058 (14)

25998

2672 (11)

5928

768(14)

125

125(100)

13

142568

18327 (13)

24712

1909 (10)

5465

399(13)

71

71(100)

14

110229

16581 (15)

18910

1667 (11)

3093

499(15)

88

88(100)

15

95436

16511 (17)

15432

1778 (13)

3420

533(16)

83

83(100)

16

96742

14331 (15)

14190

1741(12)

3307

536(16)

95

95(100)

17

79038

12212 (16)

15069

1342(12)

3388

626(15)

115

115(100)

18

107243

15605 (15)

11127

1613(11)

4079

354(14)

79

79(100)

19

48447

6970 (14)

14631

620(10)

2570

439(12)

102

102(100)

20

108979

12941 (12)

6284

1357(11)

3520

431(14)

80

80(100)

21

43739

6775 (16)

12266

772(11)

3007

169(12)

54

54(100)

22

49009

6419 (13)

7014

620(10)

1381

304(16)

88

88(100)

X

102866

23368 (23)

6123

1867(18)

1886

640(18)

156

156(100)

Y

55

11 (20)

-

-

-

-

-

-

  1. Chr = chromosome