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Table 3 Parameter settings used in GeneGo analysis

From: Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics approach

Options Setting
Use canonical pathways Yes
Network type Merged
Build options Analyze network (transcription factors)
Advanced options  
Discard objects user list No
Use indirect interactions Discard
Use interactions weights No
Add complementary objects Yes
Filter interactions by confidence level Curated only
Use binding interactions (special cases) Discard
Group networks No
Discard objects experiments No
Use unspecified reactions Discard
  1. GeneGo analysis was performed with MetaCore™ version 4.5, build 11165, on 26 November 2007. TNF and MTHFR were the input gene set.