Table 3 Parameter settings used in GeneGo analysis
Options | Setting |
|---|---|
Use canonical pathways | Yes |
Network type | Merged |
Build options | Analyze network (transcription factors) |
Advanced options | |
Discard objects user list | No |
Use indirect interactions | Discard |
Use interactions weights | No |
Add complementary objects | Yes |
Filter interactions by confidence level | Curated only |
Use binding interactions (special cases) | Discard |
Group networks | No |
Discard objects experiments | No |
Use unspecified reactions | Discard |