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Table 3 Most informative GO terms for the clusters obtained from microarray data.

From: Fast Gene Ontology based clustering for microarray experiments

Cluster

Size

p-value

IC

GO term

G1

8

0.0063

1.835

cytoplasm

G2

4

0.20

1.835

cytoplasm

   

0.888

binding

G3

2

0.009

8.751

aminoacyl-tRNA ligase activity

   

5.841

translation

   

0.888

binding

G4

19

0.020

0.888

binding

G5

2

0.0007

12.012

carbon-sulfur lyase activity

   

1.835

cytoplasm

   

1.753

primary metabolic process

G6

2

0.21

4.705

negative regulation of biological process

   

3.420

hydrolase activity

   

3.411

cellular protein metabolic process

G7

8

0.020

1.366

membrane

G8

2

0.25

4.238

transporter activity

   

3.181

transport

   

2.866

integral to membrane

G9

6

< 0.0001

3.967

extracellular region

  1. IC is the information content of given term. P-values are derived using a permutation test with 10000 repetitions. At most three GO terms are shown for each cluster. Only common GO terms with IC > 0 are shown.
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BioData Mining

ISSN: 1756-0381