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Table 1 Benchmark results.

From: Fast Gene Ontology based clustering for microarray experiments

Measure Number of GO terms csbl.go GOSim (vs. csbl.go) SemSim (vs. csbl.go)
Resnik 50 0.002 s 4.9 s (2399 ×) 4.5 s (2158 ×)
Resnik 100 0.006 s 19.5 s (3219 ×) 17.4 s (2880 ×)
Resnik 200 0.024 s 77.8 s (3245 ×) 71.0 s (2963 ×)
Lin 50 0.002 s 7.4 s (3612 ×) 4.5 s (2167 ×)
Lin 100 0.007 s 29.5 s (4284 ×) 17.4 s (2528 ×)
Lin 200 0.024 s 117.8 s (4894 ×) 71.0 s (2950 ×)
Jiang-Conrath 50 0.002 s 7.4 s (3590 ×) 4.5 s (2157 ×)
Jiang-Conrath 100 0.007 s 29.5 s (4274 ×) 17.4 s (2525 ×)
Jiang-Conrath 200 0.023 s 117.5 s (5043 ×) 70.9 s (3043 ×)
Relevance 50 0.002 s - 4.5 s (2062 ×)
Relevance 100 0.007 s - 17.4 s (2400 ×)
Relevance 200 0.025 s - 71.1 s (2866 ×)
  1. Speed difference between csbl.go and other package is shown in parenthesis. Timings of csbl.go are shown with an accuracy of 1/1000 s.