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Table 1 Benchmark results.

From: Fast Gene Ontology based clustering for microarray experiments

Measure

Number of GO terms

csbl.go

GOSim (vs. csbl.go)

SemSim (vs. csbl.go)

Resnik

50

0.002 s

4.9 s (2399 ×)

4.5 s (2158 ×)

Resnik

100

0.006 s

19.5 s (3219 ×)

17.4 s (2880 ×)

Resnik

200

0.024 s

77.8 s (3245 ×)

71.0 s (2963 ×)

Lin

50

0.002 s

7.4 s (3612 ×)

4.5 s (2167 ×)

Lin

100

0.007 s

29.5 s (4284 ×)

17.4 s (2528 ×)

Lin

200

0.024 s

117.8 s (4894 ×)

71.0 s (2950 ×)

Jiang-Conrath

50

0.002 s

7.4 s (3590 ×)

4.5 s (2157 ×)

Jiang-Conrath

100

0.007 s

29.5 s (4274 ×)

17.4 s (2525 ×)

Jiang-Conrath

200

0.023 s

117.5 s (5043 ×)

70.9 s (3043 ×)

Relevance

50

0.002 s

-

4.5 s (2062 ×)

Relevance

100

0.007 s

-

17.4 s (2400 ×)

Relevance

200

0.025 s

-

71.1 s (2866 ×)

  1. Speed difference between csbl.go and other package is shown in parenthesis. Timings of csbl.go are shown with an accuracy of 1/1000 s.