Table 3 Comparison with state-of-the-art methods on LGG and KIPAN datasets
From: MOCAT: multi-omics integration with auxiliary classifiers enhanced autoencoder
Method | LGG (2 Categories) | KIPAN (3 Categories) | ||||
|---|---|---|---|---|---|---|
ACC(%) | F1(%) | AUC(%) | ACC(%) | F1\(\_\)w(%) | F1\(\_\)m(%) | |
(95% CI) | (95% CI) | (95% CI) | (95% CI) | (95% CI) | (95% CI) | |
KNN | 72.9 (68.7-77.1) | 73.8 (69.7-77.9) | 79.9 (75.2-84.6) | 96.7 (95.3-98.1) | 96.7 (95.3-98.1) | 96.0 (94.3-97.7) |
SVM | 75.4 (69.7-81.1) | 75.7 (69.5-81.9) | 75.4 (69.7-81.1) | 99.5 (99.1-99.9) | 99.5 (99.1-99.9) | 99.4 (98.9-99.9) |
Lasso | 76.1 (73.9-78.3) | 76.7 (74.0-79.4) | 82.3 (78.9-85.7) | 97.4 (97.2-97.6) | 97.4 (97.2-97.6) | 97.2 (96.7-97.7) |
RF | 74.8 (73.3-76.3) | 74.2 (73.0-75.4) | 82.3 (81.1-83.5) | 98.1 (97.4-98.8) | 98.1 (97.4-98.8) | 97.5 (96.1-98.9) |
XGBoost | 75.6 (70.6-80.6) | 76.7 (72.7-80.7) | 84.0 (81.1-86.9) | 99.3 (98.3-100) | 99.3 (98.3-100) | 98.9 (97.2-100) |
NN | 73.7 (70.8-76.6) | 74.8 (71.8-77.8) | 81.0 (76.4-85.6) | 99.1 (98.5-99.7) | 99.1 (98.5-99.7) | 99.1 (98.5-99.7) |
GRridge | 74.6 (69.9-79.3) | 75.6 (71.1-80.1) | 82.6 (77.1-88.1) | 99.4 (98.9-99.9) | 99.4 (98.9-99.9) | 99.3 (98.8-99.8) |
BPLSDA | 75.9 (72.8-79.0) | 73.8 (70.0-77.6) | 82.5 (79.6-85.4) | 93.3 (91.7-94.9) | 93.3 (91.7-94.9) | 91.9 (89.3-94.5) |
BSPLSDA | 68.5 (65.1-71.9) | 66.2 (62.5-69.9) | 73.0 (69.8-76.2) | 91.9 (90.4-93.4) | 91.8 (90.2-93.4) | 89.5 (87.8-91.2) |
CF | 81.1 (79.6-82.6) | 82.2 (81.7-82.7) | 88.1 (87.6-88.6) | 99.9 (99.7-100) | 99.9 (99.7-100) | 99.9 (99.7-100) |
GMU | 80.3 (78.4-82.2) | 80.8 (79.3-82.3) | 88.6 (87.1-90.1) | 99.2 (98.6-99.8) | 99.2 (98.6-99.8) | 98.8 (97.7-99.9) |
Mogonet | 81.6 (79.6-83.6) | 81.4 (79.7-83.1) | 84.0 (80.6-87.4) | 97.7 (95.7-99.7) | 97.6 (95.5-99.7) | 95.8 (91.8-99.8) |
Dynamics | 83.3 (82.8-83.8) | 83.7 (83.5-83.9) | 88.5 (88.3-88.7) | 99.9 (99.8-100) | 99.9 (99.8-100) | 99.9 (99.8-100) |
MOCAT(Ours) | 85.1 \(^*\) (84.4-85.8) | 85.1 \(^*\) (84.1-86.1) | 88.5 (88.0-89.0) | 99.9 (99.8-100) | 99.9 (99.8-100) | 99.8 (99.3-100) |