From: LoFTK: a framework for fully automated calculation of predicted Loss-of-Function variants and genes
SNP_ID | Consequence | heterozygous_LoF_frequency | homozygous_LoF_frequency | Sample 1 | Sample 2 | Sample 3 |
---|---|---|---|---|---|---|
chr19_52300416_CT_C | frameshift_variant | 0.386 | 0.539 | 1 | 1 | 2 |
chr7_21543345_G_T | stop_gained | 0.499 | 0.250 | 0 | 1 | 1 |
chr10_72508273_T_C | splice_acceptor_variant | 0.425 | 0.450 | 2 | 1 | 0 |
chr1_3602477_AC_A | frameshift_variant | 4.98E-06 | 0 | 1 | 0 | 0 |
chr7_21543345_G_T | stop_gained | 0.499 | 0.250 | 0 | 2 | 1 |