Table 6 External evaluation metrics
From: Polygenic risk modeling of tumor stage and survival in bladder cancer
| Â | t-SNE | UMAP | ||||
|---|---|---|---|---|---|---|
Metric | Log-z | Unif | Norm | Log-z | Unif | Norm |
Fowlkes-Mallows index | -56.3 | -33.0 | -52.3 | -41.5 | -21.6 | -42.9 |
Adjusted Rand index | -68.2 | -39.7 | -63.3 | -51.0 | -25.9 | -52.8 |
Adjusted Mutual Information | -60.6 | -37.3 | -54.5 | -42.3 | -27.9 | -42.3 |
Normalized Mutual Information | -59.7 | -36.7 | -53.7 | -41.6 | -27.5 | -41.6 |
Homogeneity | -60.2 | -37.1 | -54.4 | -43.0 | -27.5 | -43.2 |
Completeness | -59.2 | -36.2 | -53.0 | -40.2 | -27.5 | -39.9 |
Harmonic mean (V-measure) | -59.7 | -36.7 | -53.7 | -41.6 | -27.5 | -41.6 |