Fig. 1
From: SePIA: RNA and small RNA sequence processing, integration, and analysis
SePIA workflow summarized in five generalized modules. Each module contains a brief description of the major steps performed in each pipeline. For example, the ’double-pass’ alignment means reads are mapped first to the whole genome and then to a reference transcriptome. Colors used represent common processes (black), processes specific to small RNA (purple) and RNA (green) data, and the main outputs of the modules (grey). Incorporation of a miRNA-target mRNA database to the workflow is represented in blue. Interesting molecules of the analysis module are defined as differentially expressed, predicted, or mutated