From: Prediction of donor splice sites using random forest with a new sequence encoding approach
EP | MD | Balanced | Imbalanced | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TPR | TNR | F (α = 1) | F (β = 2) | G-mean | WA | MCC | TPR | TNR | F (α = 1) | F (β = 2) | G-mean | WA | MCC | ||
P-1 | BG | 0.944 | 0.921 | 0.934 | 0.940 | 0.933 | 0.933 | 0.866 | 0.069 | 0.996 | 0.127 | 0.084 | 0.258 | 0.533 | 0.172 |
BS | 0.952 | 0.919 | 0.936 | 0.945 | 0.935 | 0.935 | 0.872 | 0.041 | 0.898 | 0.079 | 0.051 | 0.192 | 0.470 | 0.129 | |
LG | 0.895 | 0.882 | 0.889 | 0.892 | 0.888 | 0.888 | 0.777 | 0.008 | 0.993 | 0.016 | 0.010 | 0.087 | 0.502 | 0.012 | |
NB | 0.835 | 0.836 | 0.836 | 0.835 | 0.834 | 0.835 | 0.674 | 0.202 | 0.838 | 0.297 | 0.231 | 0.409 | 0.520 | 0.067 | |
KN | 0.856 | 0.840 | 0.847 | 0.852 | 0.847 | 0.848 | 0.697 | 0.048 | 0.854 | 0.087 | 0.058 | 0.200 | 0.451 | 0.012 | |
P-2 | BG | 0.927 | 0.882 | 0.907 | 0.919 | 0.904 | 0.904 | 0.810 | 0.112 | 0.992 | 0.198 | 0.135 | 0.330 | 0.552 | 0.216 |
BS | 0.934 | 0.901 | 0.918 | 0.928 | 0.917 | 0.917 | 0.835 | 0.090 | 0.996 | 0.163 | 0.109 | 0.296 | 0.543 | 0.200 | |
LG | 0.742 | 0.734 | 0.739 | 0.741 | 0.737 | 0.738 | 0.478 | 0.112 | 0.981 | 0.198 | 0.135 | 0.330 | 0.547 | 0.190 | |
NB | 0.772 | 0.758 | 0.767 | 0.770 | 0.764 | 0.765 | 0.532 | 0.159 | 0.884 | 0.250 | 0.186 | 0.373 | 0.521 | 0.073 | |
KN | 0.813 | 0.678 | 0.760 | 0.790 | 0.739 | 0.746 | 0.502 | 0.173 | 0.981 | 0.290 | 0.207 | 0.412 | 0.577 | 0.262 | |
P-3 | BG | 0.924 | 0.904 | 0.915 | 0.920 | 0.914 | 0.914 | 0.828 | 0.125 | 0.991 | 0.220 | 0.151 | 0.351 | 0.558 | 0.230 |
BS | 0.941 | 0.898 | 0.922 | 0.933 | 0.920 | 0.920 | 0.841 | 0.095 | 0.995 | 0.171 | 0.115 | 0.305 | 0.545 | 0.205 | |
LG | 0.813 | 0.775 | 0.798 | 0.807 | 0.793 | 0.794 | 0.589 | 0.120 | 0.983 | 0.210 | 0.144 | 0.342 | 0.551 | 0.202 | |
NB | 0.784 | 0.761 | 0.775 | 0.780 | 0.771 | 0.772 | 0.547 | 0.178 | 0.945 | 0.289 | 0.210 | 0.410 | 0.562 | 0.196 | |
KN | 0.795 | 0.700 | 0.756 | 0.778 | 0.742 | 0.747 | 0.501 | 0.065 | 0.989 | 0.120 | 0.080 | 0.247 | 0.527 | 0.142 |