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Table 1 Broad Dataset with Flanking Positions Identified by A, G, C, and T Character

From: Multifactor dimensionality reduction analysis identifies specific nucleotide patterns promoting genetic polymorphisms

SNP

Count

nucleotide positions

Testing accuracy.

P- value

X 2

A→G

371

+1

0.558

0.05

0.001

C→A

84

+1

0.613

0.05

0.001

C→G

95

+1

0.521

<0.01

0.001

G→A

322

+1

0.571

0.02

0.001

  1. MDR analysis of SNP flanking regions where upstream 3' to SNP site equals positions -10 through -1 and 5' region from the SNP site extending downstream equals position +1 through +10. All positions where evaluated with regard to nucleotide identity, i.e. adenine, cytosine, guanine, and thymine.
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BioData Mining

ISSN: 1756-0381