Table 4 2x2 contingency table of the number of genes in different classes for gene set overrepresentation in a list of differentially expressed genes
From: Mining SOM expression portraits: feature selection and integrating concepts of molecular function
# of genes | in list | not in list | total |
|---|---|---|---|
in set | N+ | Nset- N+ | Nset |
not in set | Nlist- N+ | N- (Nlist + Nset) + N+ | N- Nset |
total | Nlist | N- Nlist | N |